Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

AD Lung Beer Cluster Number 6 (86 genes) This page contains all miRNA mediated regulation and functional enrichment for AD Lung Beer cluster number 6. Information about lung cancer can be found on Wikipedia, and further information about the "AD Lung Beer" dataset can be found in Beer et al., 2002. Inferred miRNA Mediated Regulation Weeder-miRvestigator PITA TargetScan zzz999 zzz999 hsa-mir-548c-3p Gene Ontology Enrichment GO ID GO Term Annotated Genes in Cluster GO:0000375 RNA splicing, via transesterification reactions 7 GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 7 GO:0000398 nuclear mRNA splicing, via spliceosome 7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 49 GO:0006403 RNA localization 9 GO:0006405 RNA export from nucleus 5 GO:0006913 nucleocytoplasmic transport 8 GO:0006974 response to DNA damage stimulus 13 GO:0007049 cell cycle 20 GO:0008152 metabolic process 67 GO:0009058 biosynthetic process 47 GO:0009059 macromolecule biosynthetic process 43 GO:0010467 gene expression 39 GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 9 GO:0016032 viral reproduction 10 GO:0016070 RNA metabolic process 35 GO:0016071 mRNA metabolic process 13 GO:0034645 cellular macromolecule biosynthetic process 43 GO:0043170 macromolecule metabolic process 60 GO:0044237 cellular metabolic process 66 GO:0044238 primary metabolic process 66 GO:0044249 cellular biosynthetic process 47 GO:0044260 cellular macromolecule metabolic process 60 GO:0050657 nucleic acid transport 9 GO:0050658 RNA transport 9 GO:0051028 mRNA transport 7 GO:0051169 nuclear transport 8 GO:0051236 establishment of RNA localization 9 GO:0051276 chromosome organization 12 Overlap Between miRNA Target Genes and Enriched Gene Ontology Annotations miRNA Method GO ID GO Term Overlap GO Annotated Genes Cluster Size miRNA Targets Genes P-Value hsa-mir-548c-3p TargetScan GO:0000375 RNA splicing, via transesterification reactions 3 7 86 51 0.7033782 hsa-mir-548c-3p TargetScan GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3 7 86 51 0.7033782 hsa-mir-548c-3p TargetScan GO:0000398 nuclear mRNA splicing, via spliceosome 3 7 86 51 0.7033782 hsa-mir-548c-3p TargetScan GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 27 49 86 51 0.7546601 hsa-mir-548c-3p TargetScan GO:0006403 RNA localization 5 9 86 51 0.4612029 hsa-mir-548c-3p TargetScan GO:0006405 RNA export from nucleus 2 5 86 51 0.6743879 hsa-mir-548c-3p TargetScan GO:0006913 nucleocytoplasmic transport 5 8 86 51 0.2903207 hsa-mir-548c-3p TargetScan GO:0006974 response to DNA damage stimulus 4 13 86 51 0.9746729 hsa-mir-548c-3p TargetScan GO:0007049 cell cycle 9 20 86 51 0.8894634 hsa-mir-548c-3p TargetScan GO:0008152 metabolic process 39 67 86 51 0.5451285 hsa-mir-548c-3p TargetScan GO:0009058 biosynthetic process 27 47 86 51 0.5645822 hsa-mir-548c-3p TargetScan GO:0009059 macromolecule biosynthetic process 24 43 86 51 0.66951 hsa-mir-548c-3p TargetScan GO:0010467 gene expression 24 39 86 51 0.2730439 hsa-mir-548c-3p TargetScan GO:0015931 nucleobase, nucleoside, nucleotide and nucleic acid transport 5 9 86 51 0.4612029 hsa-mir-548c-3p TargetScan GO:0016032 viral reproduction 6 10 86 51 0.3546789 hsa-mir-548c-3p TargetScan GO:0016070 RNA metabolic process 22 35 86 51 0.2183553 hsa-mir-548c-3p TargetScan GO:0016071 mRNA metabolic process 6 13 86 51 0.7720089 hsa-mir-548c-3p TargetScan GO:0034645 cellular macromolecule biosynthetic process 24 43 86 51 0.66951 hsa-mir-548c-3p TargetScan GO:0043170 macromolecule metabolic process 35 60 86 51 0.5130978 hsa-mir-548c-3p TargetScan GO:0044237 cellular metabolic process 39 66 86 51 0.422582 hsa-mir-548c-3p TargetScan GO:0044238 primary metabolic process 38 66 86 51 0.6268262 hsa-mir-548c-3p TargetScan GO:0044249 cellular biosynthetic process 27 47 86 51 0.5645822 hsa-mir-548c-3p TargetScan GO:0044260 cellular macromolecule metabolic process 35 60 86 51 0.5130978 hsa-mir-548c-3p TargetScan GO:0050657 nucleic acid transport 5 9 86 51 0.4612029 hsa-mir-548c-3p TargetScan GO:0050658 RNA transport 5 9 86 51 0.4612029 hsa-mir-548c-3p TargetScan GO:0051028 mRNA transport 4 7 86 51 0.3989795 hsa-mir-548c-3p TargetScan GO:0051169 nuclear transport 5 8 86 51 0.2903207 hsa-mir-548c-3p TargetScan GO:0051236 establishment of RNA localization 5 9 86 51 0.4612029 hsa-mir-548c-3p TargetScan GO:0051276 chromosome organization 5 12 86 51 0.8469318

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.